MongoDB: Architectural Best Practices

December 6, 2012

With the launch of our MongoDB solutions, developers can provision powerful, optimized, horizontally scaling NoSQL database clusters in real-time on bare metal infrastructure in SoftLayer data centers around the world. We worked tirelessly with our friends at 10gen — the creators of MongoDB — to build and tweak hardware and software configurations that enable peak MongoDB performance, and the resulting platform is pretty amazing. As Duke mentioned in his blog post, those efforts followed 10Gen's MongoDB best practices, but what he didn't mention was that we created some architectural best practices of our own for MongoDB in deployments on our platform.

The MongoDB engineered servers that you order from SoftLayer already implement several of the recommendations you'll see below, and I'll note which have been incorporated as we go through them. Given the scope of the topic, it's probably easiest to break down this guide into a few sections to make it a little more digestible. Let's take a look at the architectural best practices of running MongoDB through the phases of the roll-out process: Selecting a deployment strategy to prepare for your MongoDB installation, the installation itself, and the operational considerations of running it in production.

Deployment Strategy

When planning your MongoDB deployment, you should follow Sun Tzu's (modified) advice: "If you know the [friend] and know yourself, you need not fear the result of a hundred battles." "Friend" was substituted for the "enemy" in this advice because the other party is MongoDB. If you aren't familiar with MongoDB, the top of your to-do list should be to read MongoDB's official documentation. That information will give you the background you'll need as you build and use your database. When you feel comfortable with what MongoDB is all about, it's time to "know yourself."

Your most important consideration will be the current and anticipated sizes of your data set. Understanding the volume of data you'll need to accommodate will be the primary driver for your choice of individual physical nodes as well as your sharding plans. Once you've established an expected size of your data set, you need to consider the importance of your data and how tolerant you are of the possibility of lost or lagging data (especially in replicated scenarios). With this information in hand, you can plan and start testing your deployment strategy.

It sounds a little strange to hear that you should test a deployment strategy, but when it comes to big data, you want to make sure your databases start with a strong foundation. You should perform load testing scenarios on a potential deployment strategy to confirm that a given architecture will meet your needs, and there are a few specific areas that you should consider:

Memory Sizing
MongoDB (like many data-oriented applications) works best when the data set can reside in memory. Nothing performs better than a MongoDB instance that does not require disk I/O. Whenever possible, select a platform that has more available RAM than your working data set size. If your data set exceeds the available RAM for a single node, then consider using sharding to increase the amount of available RAM in a cluster to accommodate the larger data set. This will maximize the overall performance of your deployment. If you notice page faults when you put your database under production load, they may indicate that you are exceeding the available RAM in your deployment.

Disk Type
If speed is not your primary concern or if you have a data set that is far larger than any available in memory strategy can support, selecting the proper disk type for your deployment is important. IOPS will be key in selecting your disk type and obviously the higher the IOPS the better the performance of MongoDB. Local disks should be used whenever possible (as network storage can cause high latency and poor performance for your deployment). It's also advised that you use RAID 10 when creating disk arrays.

To give you an idea of what kind of IOPS to expect from a given type of drive, these are the approximate ranges of IOPS per drive in SoftLayer MongoDB engineered servers:

SATA II – 100-200 IOPS
15K SAS – 300-400 IOPS
SSD – 7,000-8,000 IOPS (read) 19,000-20,000 IOPS (write)

CPU
Clock speed and the amount of available processors becomes a consideration if you anticipate using MapReduce. It has also been noted that when running a MongoDB instance with the majority of the data in memory, clock speed can have a major impact on overall performance. If you are planning to use MapReduce or you're able to operate with a majority of your data in memory, consider a deployment strategy that includes a CPU with a high clock/bus speed to maximize your operations per second.

Replication
Replication provides high availability of your data if a node fails in your cluster. It should be standard to replicate with at least three nodes in any MongoDB deployment. The most common configuration for replication with three nodes is a 2x1 deployment — having two primary nodes in a single data center with a backup server in a secondary data center:

MongoDB Replication

Sharding
If you anticipate a large, active data set, you should deploy a sharded MongoDB deployment. Sharding allows you to partition a single data set across multiple nodes. You can allow MongoDB to automatically distribute the data across nodes in the cluster or you may elect to define a shard key and create range-based sharding for that key.

Sharding may also help write performance, so you can also elect to shard even if your data set is small but requires a high amount of updates or inserts. It's important to note that when you deploy a sharded set, MongoDB will require three (and only three) config server instances which are specialized Mongo runtimes to track the current shard configuration. Loss of one of these nodes will cause the cluster to go into a read-only mode (for the configuration only) and will require that all nodes be brought back online before any configuration changes can be made.

Write Safety Mode
There are several write safety modes that govern how MongoDB will handle the persistence of the data to disk. It is important to consider which mode best fits your needs for both data integrity and performance. The following write safety modes are available:

None – This mode provides a deferred writing strategy that is non-blocking. This will allow for high performance, however there is a small opportunity in the case of a node failing that data can be lost. There is also the possibility that data written to one node in a cluster will not be immediately available on all nodes in that cluster for read consistency. The 'None' strategy will also not provide any sort of protection in the case of network failures. That lack of protection makes this mode highly unreliable and should only be used when performance is a priority and data integrity is not a concern.

Normal – This is the default for MongoDB if you do not select any other mode. It provides a deferred writing strategy that is non-blocking. This will allow for high performance, however there is a small opportunity in the case of a node failing that data can be lost. There is also the possibility that data written to one node in a cluster will not be immediately available on all nodes in that cluster for read consistency.

Safe – This mode will block until MongoDB has acknowledged that it has received the write request but will not block until the write is actually performed. This provides a better level of data integrity and will ensure that read consistency is achieved within a cluster.

Journal Safe – Journals provide a recovery option for MongoDB. Using this mode will ensure that the data has been acknowledged and a Journal update has been performed before returning.

Fsync - This mode provides the highest level of data integrity and blocks until a physical write of the data has occurred. This comes with a degradation in performance and should be used only if data integrity is the primary concern for your application.

Testing the Deployment
Once you've determined your deployment strategy, test it with a data set similar to your production data. 10gen has several tools to help you with load testing your deployment, and the console has a tool named 'benchrun' which can execute operations from within a JavaScript test harness. These tools will return operation information as well as latency numbers for each of those operations. If you require more detailed information about the MongoDB instance, consider using the mongostat command or MongoDB Monitoring Service (MMS) to monitor your deployment during the testing.

Installation

When performing the installation of MongoDB, a few considerations can help create both a stable and performance-oriented solution. 10gen recommends the use CentOS (64-bit) as the base operating system if at all possible. If you try installing MongoDB on a 32-bit operating system, you might run into file size limits that cause issues, and if you feel the urge to install it on Windows, you'll see performance issues if virtual memory begins to be utilized by the OS to make up for a lack of RAM in your deployment. As a result, 32-bit operating systems and Windows operating systems should be avoided on MongoDB servers. SoftLayer provisions CentOS 6.X 64-bit operating systems by default on all of our MongoDB engineered server deployments.

When you've got CentOS 64-bit installed, you should also make the following changes to maximize your performance (all of which are included by default on all SoftLayer engineered servers):

Set SSD Read Ahead Defaults to 16 Blocks - SSD drives have excellent seek times allowing for shrinking the Read Ahead to 16 blocks. Spinning disks might require slight buffering so these have been set to 32 blocks.

noatime - Adding the noatime option eliminates the need for the system to make writes to the file system for files which are simply being read — or in other words: Faster file access and less disk wear.

Turn NUMA Off in BIOS - Linux, NUMA and MongoDB tend not to work well together. If you are running MongoDB on NUMA hardware, we recommend turning it off (running with an interleave memory policy). If you don't, problems will manifest in strange ways like massive slow downs for periods of time or high system CPU time.

Set ulimit - We have set the ulimit to 64000 for open files and 32000 for user processes to prevent failures due to a loss of available file handles or user processes.

Use ext4 - We have selected ext4 over ext3. We found ext3 to be very slow in allocating files (or removing them). Additionally, access within large files is poor with ext3.

One last tip on installation: Make the Journal and Data volumes be distinct physical volumes. If the Journal and Data directories reside on a single physical volume, flushes to the Journal will interrupt the access of data and provide spikes of high latency within your MongoDB deployment.

Operations

Once a MongoDB deployment has been promoted to production, there are a few recommendations for monitoring and optimizing performance. You should always have the MMS agent running on all MongoDB instances to help monitor the health and performance of your deployment. Additionally, this tool is also very useful if you have 10gen MongoDB Cloud Subscriptions because it provides useful debugging data for the 10gen team during support interactions. In addition to MMS, you can use the mongostat command (mentioned in the deployment section) to see runtime information about the performance of a MongoDB node. If either of these tools flags performance issues, sharding or indexing are first-line options to resolve them:

Indexes - Indexes should be created for a MongoDB deployment if monitoring tools indicate that field based queries are performing poorly. Always use indexes when you are querying data based on distinct fields to help boost performance.

Sharding - Sharding can be leveraged when the overall performance of the node is suffering because of a large operating data set. Be sure to shard before you get in the red; the system only splits chunks for sharding on insert or update so if you wait too long to shard you may have some uneven distribution for a period of time or forever depending on your data set and sharding key strategy.

I know it seems like we've covered a lot over the course of this blog post, but this list of best practices is far from exhaustive. If you want to learn more, the MongoDB forums are a great resource to connect with the rest of the MongoDB community and learn from their experiences, and the documentation on MongoDB's site is another phenomenal resource. The best people to talk to when it comes to questions about MongoDB are the folks at 10gen, so I also highly recommend taking advantage of MongoDB Cloud Subscriptions to get their direct support for your one-off questions and issues.

-Harold

Comments

 

December 22nd, 2012 at 7:53am

very informative, its like reading many resources. we are looking for hosted mongoDB as half of recommendations here are already handled in that.

February 8th, 2013 at 8:10am

Thanks for the article, I want to aks you about my case, I need to install mondogb in windows server 2008 r2 64bits, can you tell me if exist some issues or problems there? You comment about win server 32 bits, the application that use mongodb is very large, and I need to have an excelent performance.

Thanks!

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Comments

 

December 22nd, 2012 at 7:53am

very informative, its like reading many resources. we are looking for hosted mongoDB as half of recommendations here are already handled in that.

February 8th, 2013 at 8:10am

Thanks for the article, I want to aks you about my case, I need to install mondogb in windows server 2008 r2 64bits, can you tell me if exist some issues or problems there? You comment about win server 32 bits, the application that use mongodb is very large, and I need to have an excelent performance.

Thanks!

Leave a Reply

Filtered HTML

  • Web page addresses and e-mail addresses turn into links automatically.
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